PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012211-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 281aa    MW: 30713.4 Da    PI: 6.0254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012211-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-121301691155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  WALNUT_00012211-RA 130 RRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 169
                         8******************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.424119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-15126174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-14127173No hitNo description
Gene3DG3DSA:4.10.280.103.6E-16130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10130169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-16130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGDMYAYDKN SRSSSASAPQ PHLLPPSSSH AGAPDEISLF LHQILLRSSS SSSPFVSNTG  60
KQAQLCDSDV LPGNPDRSLC RSALVQDGIS AVESSSAMST GSGVFLSNLS TSSLGASENE  120
TDEYDCESER RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLSMRNG  180
FSLHPMCLPG ALQPIQFSQM RMDFGEEYRP LHLNTAGIHS LNKETPLHDM FTLPNQRIVS  240
NQPSSAPNMS NIINSQTSFG LESPVQAHLG PFQLHVSSEV R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889816.12e-96PREDICTED: transcription factor SPATULA isoform X1
RefseqXP_015889817.11e-96PREDICTED: transcription factor SPATULA isoform X2
RefseqXP_015889818.18e-97PREDICTED: transcription factor SPATULA isoform X3
RefseqXP_015889819.19e-97PREDICTED: transcription factor SPATULA isoform X4
SwissprotQ9FUA47e-40SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0U2RXV11e-90A0A0U2RXV1_9R
STRINGVIT_07s0031g00450.t018e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-41bHLH family protein